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Epigen_SetQC_manual
Preface
1.
Sample Information
2.
Sequencing metrics
3.
Alignment metrics
3.1.
Alignment statistics (by count)
3.2.
Alignment statistics (by %)
3.3.
Mitochondrial read fraction
3.4.
FastQ Screen
3.5.
Fragment size distribution
3.6.
GC content after alignment
4.
Signal-to-noise metrics
5.
Peak metrics
5.1.
Peak counts
5.2.
Fraction of Reads in Peaks (FRiP)
5.3.
PCA
5.4.
Correlation matrix
6.
Genome browser
7.
Download
8.
Glossary
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Epigen_SetQC_manual
Peak counts
The number of peaks called per sample. Usually ~100K-200K.