ATAC-seq data report's user manual

@ UCSD Center for Epigenomics

The Center for Epigenomics at University of California San Diego (UCSD) generates a data report upon completion of all ATAC-seq projects. An example report can be found here. This tutorial explains each section of the data report, and provides guidelines for the interpretation of data quality metrics.

The data report has 7 sections, listed in a legend on the left side of each report. [Fig.0. Major sections in a typical report]:

  1. Sample Information
  2. Sequencing metrics
  3. Alignment metrics
  4. Signal-to-noise metrics
  5. Peak metrics
  6. Genome browser
  7. Download

This user manual can be read online here and downloaded as pdf here.