• Contact us / Support
  • Epigen_SetQC_manual
  • Preface
  • 1. Sample Information
  • 2. Sequencing metrics
  • 3. Alignment metrics
    • 3.1. Alignment statistics (by count)
    • 3.2. Alignment statistics (by %)
    • 3.3. Mitochondrial read fraction
    • 3.4. FastQ Screen
    • 3.5. Fragment size distribution
    • 3.6. GC content after alignment
  • 4. Signal-to-noise metrics
  • 5. Peak metrics
    • 5.1. Peak counts
    • 5.2. Fraction of Reads in Peaks (FRiP)
    • 5.3. PCA
    • 5.4. Correlation matrix
  • 6. Genome browser
  • 7. Download
  • 8. Glossary
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Epigen_SetQC_manual

Alignment metrics.

This section has six tabs:

  1. Alignment statistics (by count)
  2. Alignment statistics (by %)
  3. Mitochondrial read fraction
  4. FastQ Screen
  5. Fragment size distribution
  6. GC content after alignment